AT3G05450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in 202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi - 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1573909..1576418 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 48904.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.17 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||
| Length | 440 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPKSCDGEV NDGSSSDVNV MEPMETSTGV GLSFLGKRRA ETPNPGESEQ IADEDGEEYE SVEDVVVEDD RIRGGRDEED SEPEWGYDSF DGREYHSSDQ 101: MGYSDKEVSL SRQTVFLPSG VELVRSTILK RTLGKALPSG LNVKLEHILR ANYNPGSMSK FYITFAARES DSPDAPSEEY QAKAAWSAAE KTYPIFCRPS 201: ESKVYSIIEM APKSSDGETK YGSSSDGEIK CGSSSENQST ESMEITTGDE SSMLGKRKVE TTDLEDPDEN DEEDPDENDE EDSESDSDSE WDKDSFDGRE 301: YHSSDDQREY ATKDLEKRAR FYKRTVIETK SSAEFPPYLW GGIATLRGLD EKMRTGVTGF NVKLDHVLRA NFNPGGRTTY YITFAARESD SPDAPLVEYQ 401: AKVDWSAGKT YPILCRPTSP KLVEVDGGAQ LKKVSEEIIN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)