AT3G05430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G27650.1); Has 708 Blast hits to 664 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 18; Plants - 206; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1567745..1571037 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107906.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||
| Length | 965 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSAEVNVNP RVFGDSFVTF SGNGSGKFEM IDQAEAFLME LDSVAADTGS DGNGNVDLGS RVSNSETEPR FCEMKREIRD SDHRFYELCN ESGEKKMEKR 101: RVPDYKSFLS EFDDYVAREK MGSRNSKALS YGFEVGDMVW GKVKSHPWWP GQIFNEAFAS PSVRRVKKMG YVLVAFFGDN SYGWFDPAEL IPFEPHVKEK 201: SQQTSSDHFA KAVEEAMNEV GRRSALGLTC KCRNQYNFRP INAQGYFAVD VPDYEVQAIY SSKQIQKARD SFSSVQTLAF VKRCALAPQE CDTDSLKSFQ 301: KKVAVCAFRR AVFEEFDETY EQAFRARSVY CLMKTHEPLN RAPLRVPLSG SLVSAETLGN PKSYTKAMNV KDSTKQDKYL PKRREEAGDM TVQFGQVQES 401: SQFQGINGSS AWDRLLQRRT PCLQTPRKHE QTGLVSMNFT SSSGNIPGKK SSVSKLSRDD DKGLAQESDV RMGEKATLFP DQEKFEPMKS LKQDETGTNS 501: RSNKSSLKLF SGGKFSAGVG IKKGNVVKRS SGEMKSENCP PEPKKKKKEY VSELNRDTPD KRKALSSGEA WAKKSSQVDS AKRRSNMLIV KLDGLQLLSN 601: LLALSLDPLF GSSDRSSFRV IRQFFFHFRS HVYQKSLATS PSATKLSKSA KTLCRANEQS KAGRNRISSD SQQDVPSTKK LKKTIQFKPL ASDKKTNQDA 701: TKRSSLAPLN PVRDQCRVPI NAKPAIVQQE KKTGPSAMVV EPTMLVMMFP PGESLPSIDL LKARFGRFGQ LDQSAIRVSW KSSICRVGFL YKLDAQTALR 801: YVSGSKSLFG NVNVTYFLRD MKASSASGDH ELKKAKRPKT DKPITKPLNQ LLEQAPPVHQ PNIQLKSCLK KPGNNRNGNH RTVRVKFMLG EKETESPFSV 901: SILPLSSQDS EPKPVNNQVD HVEPPLDPSQ LKVDISLQMM ELLTRCNDAV ANVTGLLGYV PYHSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)