AT3G05165.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: substrate-specific transmembrane transporter activity, carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G05160.1); Has 25623 Blast hits to 25114 proteins in 1859 species: Archae - 413; Bacteria - 10506; Metazoa - 4579; Fungi - 6347; Plants - 2646; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1458287..1462737 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51296.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVEEENRSM EEGLLQHQND RDDRRITACV ILSTFVAVCS AFSYGCAAGY TSGAETAIMK ELDLSMAQFS AFGSFLNVGG AVGALFSGQL AVILGRRRTL 101: WACDFFCVFG WLSIAFAKNV FWLDLGRISL GIGVGLISYV VPVYIAEITP KHVRGAFTAS NQLLQNSGVS LIYFFGTVIN WRVMAVIGAI PCILQTIGIF 201: FIPESPRWLA KIRLSKEVES SLHRLRGKDT DVSGEAAEIQ VMTKMLEEDS KSSFSDMFQK KYRRTLVVGI GLMLIQQLSG ASGITYYSNA IFRKAGFSER 301: LGSMIFGVFV IPKALVGLIL VDRWGRRPLL LASAVGMSIG SLLIGVSFTL QQMNVLPELI PIFVFVNILV YFGCFAFGIG GLPWVIMSEI FPINIKVSAG 401: TIVALTSWTS GWFVSYAFNF MFEWSAQGTF YIFAAVGGMS FIFIWMLVPE TKGQSLEELQ ASLTGTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)