AT3G05160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.916 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G05165.3); Has 26526 Blast hits to 25887 proteins in 1891 species: Archae - 454; Bacteria - 10936; Metazoa - 4979; Fungi - 6352; Plants - 2668; Viruses - 0; Other Eukaryotes - 1137 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1453267..1456997 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50302.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEGLLRHEN DRDDRRITAC VILSTFVAVC SSFSYGCANG YTSGAETAIM KELDLSMAQF SAFGSFLNLG GAVGALFSGQ LAVILGRRRT LWACDLFCIF 101: GWLSIAFAKN VLWLDLGRIS LGIGVGLTSY VVPVYIAEIT PKHVRGAFSA STLLLQNSGI SLIYFFGTVI NWRVLAVIGA LPCFIPVIGI YFIPESPRWL 201: AKIGSVKEVE NSLHRLRGKD ADVSDEAAEI QVMTKMLEED SKSSFCDMFQ KKYRRTLVVG IGLMLIQQLS GASGITYYSN AIFRKAGFSE RLGSMIFGVF 301: VIPKALVGLI LVDRWGRRPL LLASAVGMSI GSLLIGVSFT LQEMNLFPEF IPVFVFINIL VYFGFFAIGI GGLPWIIMSE IFPINIKVSA GSIVALTSWT 401: TGWFVSYGFN FMFEWSAQGT FYIFAMVGGL SLLFIWMLVP ETKGQSLEEL QASLTGTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)