AT3G05110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3444) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT3G04960.4); Has 6844 Blast hits to 4546 proteins in 547 species: Archae - 38; Bacteria - 684; Metazoa - 1857; Fungi - 441; Plants - 665; Viruses - 148; Other Eukaryotes - 3011 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1426297..1427719 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43079.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPENPQLFT LRSETPEKES VPAQTEDQSR ERVSDLEQIQ KEDSSEEICT ESERMRKETE LIETSLKQLE ARENELREVE AKRKFFDLKE KELEEKEKEL 101: ELKQRQVQER SIQDGPSVDA EPLTQQRNHN DEDKEKDSAS VLSASVQIIE NDEDHEPVMC VVDSEFNDFR KTMSSFMAGQ VWALYDGIDS MPRCYGRIKK 201: VNKCQSSLQV TWLEPKAEES VLAACGRFKW ENTDTIQSHL AFSHEIHPII RGKHFIAVNP SKGETWALFR DWSKSWNNDP EQHKTPYRYD FVEVLVSFDD 301: SLGVGVAYLG KVQGFASVYK QAVQHGVISF MITPEEMQRF SHRVPSFRLN GDEKEGIPSC YPCCYPQLHT RA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)