AT3G04960.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.842 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3444) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1373819..1375769 | ||||||||||||||||||||
| Molecular Weight (calculated) | 64358.60 Da | ||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||
| Length | 553 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSTERTKFR SMEPATSSPL PRDTSEQDPA LAQSEDQSQG RFGFLKQRAM EKEVSVRNQI LELEKKEERL RLVEERERKI EASFSTLQEK GNESDLILLM 101: EANVMRLVLQ MQFEQVVVAQ LNAQENFLGS LHDSMMKKHE ELMTELEARK NEVALISKTI DAKTCDLDMK VKDFDLKQTT ESERMRKETE LMETSLKQLE 201: ARENELRLLN ETIQGKSMEL EKKEVNFQLK HEAAARETEV KNKFLELKEK KLEEREQHLE LKQRKKEKPA IRAETRKRSR LEYESPLSAE KGRYAETLIR 301: PGKKQVQKRE AHEIIYIDED EPFNCPDPDF HDFNNTMSSF AVGQVWALYD PVDDMPRYYA EIRKVLQPQL SLRVTWLESL QTTEEPIPAC GRFEHGKSET 401: SSHLMFSHEM YHTIRGQYVT INPRKGETWA LFGDWTKTWK SHSEQQKTPY SYDFVEVVTE FDSDRGIGVA YLGRVEGFTS VYERAAQNGL VEIMISCDEM 501: LRFSHRVPSF KMTGDEKEGV PAGSFELDPA AVPRVYLKDA KVKEEKMEPI VLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)