AT3G04960.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.794 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3444) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 33111 Blast hits to 21453 proteins in 1461 species: Archae - 544; Bacteria - 3468; Metazoa - 15851; Fungi - 2267; Plants - 1766; Viruses - 45; Other Eukaryotes - 9170 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:1373819..1375769 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70543.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSTERTKFR SMEPATSSPL PRDTSEQDPA LAQSEDQSQG RLRVSAYDLM VVDSDLEGLD QRKEEMRNIF DDIQDKASLI LQFSLKWEEI DDRFGFLKQR 101: AMEKEVSVRN QILELEKKEE RLRLVEERER KIEASFSTLQ EKGNESDLIL LMEANVMRLV LQMQFEQVVV AQLNAQENFL GSLHDSMMKK HEELMTELEA 201: RKNEVALISK TIDAKTCDLD MKVKDFDLKQ TTESERMRKE TELMETSLKQ LEARENELRL LNETIQGKSM ELEKKEVNFQ LKHEAAARET EVKNKFLELK 301: EKKLEEREQH LELKQRKKEK PAIRAETRKR SRLEYESPLS AEKGRYAETL IRPGKKQVQK REAHEIIYID EDEPFNCPDP DFHDFNNTMS SFAVGQVWAL 401: YDPVDDMPRY YAEIRKVLQP QLSLRVTWLE SLQTTEEPIP ACGRFEHGKS ETSSHLMFSH EMYHTIRGQY VTINPRKGET WALFGDWTKT WKSHSEQQKT 501: PYSYDFVEVV TEFDSDRGIG VAYLGRVEGF TSVYERAAQN GLVEIMISCD EMLRFSHRVP SFKMTGDEKE GVPAGSFELD PAAVPRVYLK DAKVKEEKME 601: PIVLV |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)