AT3G04960.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.871 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3444) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 20945 Blast hits to 14757 proteins in 1130 species: Archae - 326; Bacteria - 2117; Metazoa - 9449; Fungi - 1430; Plants - 1214; Viruses - 36; Other Eukaryotes - 6373 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:1374255..1375769 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58861.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKEVSVRNQ ILELEKKEER LRLVEERERK IEASFSTLQE KGNESDLILL MEANVMRLVL QMQFEQVVVA QLNAQENFLG SLHDSMMKKH EELMTELEAR 101: KNEVALISKT IDAKTCDLDM KVKDFDLKQT TESERMRKET ELMETSLKQL EARENELRLL NETIQGKSME LEKKEVNFQL KHEAAARETE VKNKFLELKE 201: KKLEEREQHL ELKQRKKEKP AIRAETRKRS RLEYESPLSA EKGRYAETLI RPGKKQVQKR EAHEIIYIDE DEPFNCPDPD FHDFNNTMSS FAVGQVWALY 301: DPVDDMPRYY AEIRKVLQPQ LSLRVTWLES LQTTEEPIPA CGRFEHGKSE TSSHLMFSHE MYHTIRGQYV TINPRKGETW ALFGDWTKTW KSHSEQQKTP 401: YSYDFVEVVT EFDSDRGIGV AYLGRVEGFT SVYERAAQNG LVEIMISCDE MLRFSHRVPS FKMTGDEKEG VPAGSFELDP AAVPRVYLKD AKVKEEKMEP 501: IVLV |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)