AT3G04540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine-rich protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a defensin-like (DEFL) family protein. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cysteine-rich protein; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: Cysteine-rich protein (TAIR:AT1G32763.1); Has 28 Blast hits to 28 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1223305..1223714 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 8363.25 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.27 | ||||||||||||||||||||||||||||
| Length | 80 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MAITKTSVTL LLLIIMAASL SNFSVLASEI KPTGRVDNQC KEMCSATFGD GKCAADCRKA GFSSGRCLTS SPFGNKCCCT | ||||||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)