AT3G04440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.519 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plasma-membrane choline transporter family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G03700.1); Has 327 Blast hits to 327 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 118; Plants - 134; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1178718..1180537 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53123.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.02 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.35 | ||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTPTSNGHA SRMQIQEPRI MSPLPPSSSP FAFKEQQGRP PPTTQQTIAG KLFRTLFKGL LFSQLTLISL LVIVLTIRGL ISASTHHFHL KKWYPPLLAS 101: VAVSGIASLA WQCIFIYNPS RAVKATFWLS PILTCSVGIL LVLIGSAVDA GIGAVFVLFA ITQSLYGCWI TPRLEYTDKI LSLATAFPPA RTREVVCLSI 201: IVSVVYSGFL VTGIGGATST RTNLDILFIS VIIISLAWTM QVIKNVQQVA ISRARYVNFA HGEDMDAWNA FRITMKHLTG SICVGSTLVP IIVFIRGSIR 301: SVNLMSGSSD EVMYSGADCF STIANKLITL GNRWGFVHVG TYDKGFMEAS SDTWKKFRST TGLEKLIDSD LTSSFCFLSA VSVGAVSSLT AGIWMLLIHK 401: DYALEVTLYA FIIGYFVGRV GLAWLQACVL AYYVAYSEDP QSMRFDGTIP QRIQRLQMLS AHRDNRELEV GRDREEDSYN NC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)