AT3G04380.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET-domain containing protein lysine methyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9. One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUVR4; FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: homolog of SU(var)3-9 1 (TAIR:AT1G04050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1161602..1164539 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52953.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.27 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISLSGLTSS VESDLDMQQA MLTNKDEKVL KALERTRQLD IPDEKTMPVL MKLLEEAGGN WSYIKLDNYT ALVDAIYSVE DENKQSEGSS NGSSIQVVQK 101: QPQLSNGDRK RKYKSRIADI TKGSESVKIP LVDDVGSEAV PKFTYIPHNI VYQSAYLHVS LARISDEDCC ANCKGNCLSA DFPCTCARET SGEYAYTKEG 201: LLKEKFLDTC LKMKKEPDSF PKVYCKDCPL ERDHDKGTYG KCDGHLIRKF IKECWRKCGC DMQCGNRVVQ RGIRCQLQVY FTQEGKGWGL RTLQDLPKGT 301: FICEYIGEIL TNTELYDRNV RSSSERHTYP VTLDADWGSE KDLKDEEALC LDATICGNVA RFINHRCEDA NMIDIPIEIE TPDRHYYHIA FFTLRDVKAM 401: DELTWDYMID FNDKSHPVKA FRCCCGSESC RDRKIKGSQG KSIERRKIVS AKKQQGSKEV SKKRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)