AT3G03950.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.544 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Physically interacts with CIPK1. Located in the nucleus. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1021502..1023767 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48234.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGAASSDRL VTSFPLLDTA DLFQDLSLGS DANEVPMNFT KGSFQHPYGH APYGASSHGS ERRPNMNAGN LLNGGDSIGS YPWGYIPANY PSGGYPDPRF 101: GYDRNSNHSS FSHLMNPHSS QEVPSFDQLG YNDHLYSNHG LYGLYGNVID SGHAYGTFGY DSWKLGRGWY PVDGYRKTRS FNHGRGYSDE KADRLNELCR 201: GPRSSDFKNP QVLNSSMLDA MKQDVSAVDL QRYNGENFPE SFVKAKFFVI KSYSEDDVHN CIKYGAWSST PTGNKKLNAA YYEAKENSQE CPVYLLFSVN 301: ASGQFVGLAE MVGPVDFNKT MEYWQQDKWI GCFPVKWHII KDIPNSLLRH ITLANNENKP VTNSRDTQEV NLEHGTKIIK IFKEYMSKTC ILDDYKFYET 401: RQKIIRDKKI KQKKQALDGA SGETINLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)