AT3G03620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.805 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G17700.1); Has 8317 Blast hits to 8249 proteins in 1758 species: Archae - 126; Bacteria - 5711; Metazoa - 138; Fungi - 320; Plants - 1334; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:873904..876252 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55300.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.46 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 500 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTQEEMEER LLREGSDAEG QSNNRESIYL RTKVWSEVNK MWRIALPSSL FRMTSFGSII VAQAFIGHSS ELGLAAYALL QSTFIRFLYG LMGGMSSATE 101: TLCGQAYGAE QYHTMGIYLQ RSWIVDMAVT TLFLPFIVLA GPILRLLGQN VEITKTVDEI YPWMIPYVYS LIFTMTIQMY LQAQMRNAIV GVLSTLSLAL 201: DLVVTWWCVS VMGMGIGGAL LGLNVGSWAM VLAEFVYIFG GWCPFTWTGF SIAAFVDLIP MLKLSISSGF MICLEYWYMS ILVLMAGYTK DAKIAISAFS 301: ICQYIYTWEL NICLGFLGAA CVRVANELGK GDAHAVRFSI KVILTISTLM GVIFSALCLA FCGRISYLFS NSDEVSDAVN DLSVILAVSI LLNSIQPILS 401: GVAVGAGMQS IVAVVNLASY YAIGIPLGLI LTYVFHLGVK GLWSGMLAGI AIQTIILCYI IYKTDWELEV KRTCERMKVW SLKPSNEESN PIIREESRSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)