AT3G03400.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.950 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : EF hand calcium-binding protein family | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 13690 Blast hits to 10114 proteins in 1236 species: Archae - 0; Bacteria - 48; Metazoa - 5217; Fungi - 2887; Plants - 3646; Viruses - 0; Other Eukaryotes - 1892 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:-:808745..809158 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 15068.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.17 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 137 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNNMSLSDIF ERFDTSKDGK ISWEEFRDAI HALSPSIPSE KLVEMFIQLD TNGDGQVDAA KFASCMDQTA QSSGGDVEKE LKDAFKLYDI NCDGKISANE 101: LHVVMTRLGE KCTVESCVGM VQAIDVDGDG YIRFVGV |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)