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AT3G03400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : EF hand calcium-binding protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 13690 Blast hits to 10114 proteins in 1236 species: Archae - 0; Bacteria - 48; Metazoa - 5217; Fungi - 2887; Plants - 3646; Viruses - 0; Other Eukaryotes - 1892 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AC009895EMBL:CP002686
EnsemblPlants:AT3G03400EnsemblPlants:AT3G03400.1entrez:821266Gene3D:1.10.238.10
GeneID:821266Genevisible:Q9SRP4GO:GO:0005509Gramene:AT3G03400.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF573HOGENOM:HOG000233018InParanoid:Q9SRP4
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT3G03400
KO:K13448OMA:SANELHVPaxDb:Q9SRP4Pfam:PF00036
Pfam:PF13499Pfam:Q9SRP4Pfscan:PS50222PhylomeDB:Q9SRP4
PRIDE:Q9SRP4PRO:PR:Q9SRP4PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:Q9SRP4Proteomes:UP000006548RefSeq:NP_186990.1scanprosite:PS00018
SMART:SM00054SMR:Q9SRP4STRING:3702.AT3G03400.1SUPFAM:SSF47473
TAIR:AT3G03400UniGene:At.51347UniProt:Q9SRP4
Coordinates (TAIR10) chr3:-:808745..809158
Molecular Weight (calculated) 15068.70 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.23
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNMSLSDIF ERFDTSKDGK ISWEEFRDAI HALSPSIPSE KLVEMFIQLD TNGDGQVDAA KFASCMDQTA QSSGGDVEKE LKDAFKLYDI NCDGKISANE
101: LHVVMTRLGE KCTVESCVGM VQAIDVDGDG YIRFVGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)