AT3G02270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Trimeric LpxA-like enzyme | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 3426 Blast hits to 3381 proteins in 843 species: Archae - 306; Bacteria - 1238; Metazoa - 499; Fungi - 246; Plants - 265; Viruses - 3; Other Eukaryotes - 869 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:448977..451007 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76353.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 676 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRKKRAAK ISEDSEEEQS RRQRLQAILL ADSFATKLLP LTLERPNVLL PLVNIPMIDY TLAWLESAGI EEVFVFCSMQ VIDYLNNSDW YSHKDFTVKT 101: IESPQNSTSA GDALRYIYEQ QIETSQIQGD FVLVNGCIVS NMPLTQLIQE HRDRKKKDEK AIMTMVIRQS LITDHQLFIA VNPLTKQLLY YDEDNICFDK 201: SLLDRNPSVL LCSDMQDCYI DICSLEVLSL FVDNFDYQHM RCDFVEGVLA DDIIGYKIFT HEISSCYASR IENFRSYDMV SKDIIQRRTF PYVPDMKFSG 301: NRTLKLERQG IYKASDATQL PSAHVGASYV IGHATNIGSG TKILNSVIGN GCSIGSNVVI QGSYIWNNVT VEDGCEIRNA IVCDEVKVCA GAIVKPGVVL 401: SFKVVVGRDF VVPAYSQVSL LRQPMEEDSD EENLLSGVDL QMESKLGLDG AGYIWRQACE DEWKHSVPPI PKDKLAEIIK AIDDDDTDDE SVVTTSGDAN 501: TSINNDLFDF EREVDGTFLR AVEENIVADL AVLEINSLRL SYNMESAHCA GAIFYSMMKL AVSTPHSSIN DLYRNASSII TRWKGLLGFY VKKSDEQIEV 601: ISRLEEMCEE SAHELGTLFA HILRYMYEEE NDLLQEVAIL RWSDEKAGAD ESDKVYLKQC EPFITWLKET SDDEDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)