AT3G02160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.515 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Bromodomain transcription factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Bromodomain transcription factor; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 180 Blast hits to 180 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:394615..395808 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44074.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||
| Length | 397 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT 101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF 201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH 301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)