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AT3G01950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF 3339)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G14110.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC010797EMBL:AC011664EMBL:AK119150EMBL:BT004658
EMBL:CP002686EnsemblPlants:AT3G01950EnsemblPlants:AT3G01950.1entrez:821067
GeneID:821067GO:GO:0016021GO:GO:0031225Gramene:AT3G01950.1
hmmpanther:PTHR33128hmmpanther:PTHR33128:SF10HOGENOM:HOG000237395InterPro:IPR021775
KEGG:ath:AT3G01950OMA:SIVIHTLPfam:PF11820PhylomeDB:Q9S721
Proteomes:UP000006548RefSeq:NP_186844.1STRING:3702.AT3G01950.1TAIR:AT3G01950
TMHMM:TMhelixUniGene:At.45141UniProt:Q9S721
Coordinates (TAIR10) chr3:+:324026..324238
Molecular Weight (calculated) 7576.58 Da
IEP (calculated) 7.80
GRAVY (calculated) 1.22
Length 70 amino acids
Sequence (TAIR10)
(BLAST)
1: MGLDWGPVLM SVIFFIVLSP GVLFQLPGKS KAVEFGGFQT SGPSIVIHTL LFFAFITISL IALHIHIYAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)