AT3G01900.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.961 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cytochrome P450, family 94, subfamily B, polypeptide 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP94B | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 94, subfamily B, polypeptide 2 (CYP94B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily B, polypeptide 3 (TAIR:AT3G48520.1); Has 24612 Blast hits to 24535 proteins in 1394 species: Archae - 46; Bacteria - 2681; Metazoa - 9088; Fungi - 5092; Plants - 6664; Viruses - 3; Other Eukaryotes - 1038 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:312359..313849 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56463.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||
| Length | 496 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEASTFILLL VLVLLLVSAG KHVIYSCRNS TPKTYPVIGC LISFYTNRNR LLDWYTELLT ESPSRTVVIR RLAARRTVVT ANPSNVEYIL KTNFDNYPKG 101: KPFTEILGDF LGNGIFNVDG NLWLKQRRLA THDFTPKSLR EYVTVLRNEV EKELLAFLNA AAEDSQPFDL QELLRRFTFN IVCIVFLGID RCTLNPSSPV 201: SEFDRAFQTA SAVSAGRGSA PLSFVWKFKR LVGFGSEKEL RKAVGEVHNC VDEIIRDKKR KPANQDFLSR LIVAGESDET VRDMVISIIM AGRDTTSAVA 301: TRLFWLITGH EETEHDLVSE IRSVKEEITG GFDYESLKKL SLLKACLCEV MRLYPPVPWD SKHALTDDRL PDGTLVRAGD RVTYFPYGMG RMEELWGEDW 401: DEFKPNRWAE SYDKTCCRVL KKVNPFKFPV FQAGPRVCLG EEMAYVQMKY IVASILDRFE IEPIPTDKPD FVPMLTAHMA GGMQVRVHRR DPSLSP |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)