AT3G01880.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.987 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF946) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT3G01870.1); Has 287 Blast hits to 285 proteins in 76 species: Archae - 0; Bacteria - 16; Metazoa - 29; Fungi - 107; Plants - 134; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:307782..309560 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 66534.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.09 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||
| Length | 592 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQLLYETYLK FLLFFVFLFV KQLSWAETGT NPLTNISYVN SLGYPFKYPY LSSNGLPVET SFKFPSPLPS MPSDGGNFGK RSIDMGGLEV TQISISNSTS 101: HRVWRTYEGG PDNMGVSIFE PTTIPRNFFK LGFYAQPNNR QLFGWILVAK DVSGSNLRPP VDYTEVGNTT TLLIKQEGPA YFWQPLCPNG YHAVGLYVTT 201: SPMKPSLGQN SISCVRSDLT EQSEADTWVW RIKDMTISSL RPATRGVEAT GVFTGTFSCK QLNFLPHPPP LFCLKNTKFD LSSMPSENQT RVLFKTYSPW 301: IYLHPKEDFL PSSVNWVFAN GALLHKKGNE SIPVPIHPNG SNLPQGGCND DLFWLDYLVD KKAREKVKRG DLESTKVYLH IKPMFGATFT DIVVWLFFPY 401: NGNAHLKFLF IKSLSLGNIG EHVGDWEHVT LRISNFNGEL WRVYFSEHSG GTLVDACDLE FMQGGNKPVV YSSLHGHAMF SKPGVVLQGG GKSGIRNDMA 501: RSDKCFDAGI GYEVIAGPGV VEPPWLNYFR KWGPRVHYRI DIFLNSVAKI LPIFLRKGLR KLINKIPLEM RGQDGPTGPK VKVTWTGDEQ YS |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)