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AT3G01530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 57
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 57 (MYB57); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 21 (TAIR:AT3G27810.1); Has 8770 Blast hits to 8117 proteins in 470 species: Archae - 0; Bacteria - 0; Metazoa - 723; Fungi - 481; Plants - 5812; Viruses - 4; Other Eukaryotes - 1750 (source: NCBI BLink).
Protein Annotations
BioGrid:6446eggNOG:COG5147eggNOG:KOG0048EMBL:AC009325
EMBL:AF062892EMBL:AK118091EMBL:AY519582EMBL:BT005574
EMBL:CP002686EnsemblPlants:AT3G01530EnsemblPlants:AT3G01530.1entrez:821113
Gene3D:1.10.10.60GeneID:821113Genevisible:Q9SSA1GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009740
GO:GO:0009867GO:GO:0080086Gramene:AT3G01530.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF469InParanoid:Q9SSA1InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT3G01530KO:K09422OMA:NVEDLWP
PaxDb:Q9SSA1Pfam:PF00249Pfam:Q9SSA1Pfscan:PS51294
PhylomeDB:Q9SSA1PIR:T51664PRO:PR:Q9SSA1PROSITE:PS51294
ProteinModelPortal:Q9SSA1Proteomes:UP000006548RefSeq:NP_186802.1SMART:SM00717
SMR:Q9SSA1STRING:3702.AT3G01530.1SUPFAM:SSF46689TAIR:AT3G01530
tair10-symbols:ATMYB57tair10-symbols:MYB57UniGene:At.26485UniGene:At.63553
UniProt:Q9SSA1
Coordinates (TAIR10) chr3:-:210352..211151
Molecular Weight (calculated) 23718.10 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.83
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: METTMKKKGR VKATITSQKE EEGTVRKGPW TMEEDFILFN YILNHGEGLW NSVAKASGLK RTGKSCRLRW LNYLRPDVRR GNITEEEQLL IIQLHAKLGN
101: RWSKIAKHLP GRTDNEIKNF WRTKIQRHMK VSSENMMNHQ HHCSGNSQSS GMTTQGSSGK AIDTAESFSQ AKTTTFNVVE QQSNENYWNV EDLWPVHLLN
201: GDHHVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)