AT3G01320.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIN3-like 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190). | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SIN3-like 1 (SNL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 2 (TAIR:AT5G15020.2). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:106730..113197 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 154933.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1360 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV 0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT 0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL 0301: HHFPEKRKSS RRAEALEAYS GMYKQAFVFC EKVKDRLCSQ DDYQTFLKCL NIFSNGIIQR KDLQNLVSDL LGKFPDLMDE FNQFFERCES ITDGFQRLAG 0401: VMSKKLFSSE EQLSRPMKVE EKESEHKPEL EAVKETEQCK KEYMGKSIQE LDLSDCECCT PSYRLLPADY PIPIASQRSE LGAEVLNDHW VSVTSGSEDY 0501: SFKHMRRNQY EESLFRCEDD RFELDMLLES VSSAARSAES LLNIITEKKI SFSGSFRIED HFTALNLRCI ERLYGDHGLD VIDILNKNPA TALPVILTRL 0601: KQKQGEWKKC RDDFDKVWAN VYAKNHYKSL DHRSFYFKQQ DSKNLSAKSL LAEIKELKEK SQNDDDVLLS ISAGYRQPIN PNLEYEYLNR AIHEDMFKVV 0701: QFSCEELCST KEQLSKVLRL WENFLEAVLG VPPRAKGTDL VEDVVINPKT LDVNHSTSPN GEAAVSSGGD TARLASRKLK SAANGDENSS SGTFKHGIGL 0801: LNKDSTGKEN LEDVEIANRD GVACSAVKPQ KEQETGNEAE KRFGKPIPMD ISERAAISSI SIPSGAENNH CVVGKEVLPG AHEIQAKPSD TLTDIHHDVD 0901: SIETVHSTQG GDVGNSIVLA NGLRSDSSKG TRNSDDPEGP SRNEKEEGEL SPNGDFEDNF GVYKDHGVKS TSKPENSAEA EVEADAEVEN EDDADDVDSE 1001: NASEASGTES GGDVCSQDED REEENGEHDE IDGKAESEGE AEGMDPHLLE GESELLPQSE RVLLSVRPLS KHVAAVLCDE RTKDLQVFYG NDDFYVLFRL 1101: HQILYERILY AKRNCSGGEL KSKNLKDTNA GDPYARFMRV LYGLLDGSAE NTKFEDECRA IIGNQSYVLF TLDKLIYRLV KQLQAIVADE MDNKLLQLYE 1201: YEKSRKPGRV IDSVYYENVR VLVHEENIYR LECSSLPSRL SIQLMDNIIE KPEAYAVSMD PTFASYMQTE LLSVSSGKKE EGHDIVLQRN LTGLYDLCKA 1301: MEGVEVVNGL ECKMSCSSYK IAYVLDTEDY FHRKKKKKKT EQLWQRNKVR VERFHRFLSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)