AT3G01160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:54655..57449 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81497.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.51 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.30 | ||||||||||||||||||||||||||||
| Length | 713 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSKNKKQRK GESIEEAKGS SGVAEEGNEM IKDPRFSSAH TDPKFRRMRR RDSKVAIDSR FQPMFNDKRF ATGSAPVDKR GKRRTGGTGK DSLREFYRIE 101: DEGKQKTEEE SGDESGSETE INDLKSEKSS HVESEEESES ELKVASLDDE SDEKADSEEL SSQEEEEEED DTDEDDEAMY EDEGPEIPEE NIPLIQEETH 201: RLAIVNMDWR HVSAKDLYVV LNSFLPKDGR ILSVAVYPSE FGLERMKEEE IHGPVIDGDK KNDASDDEDE EEEEDEDVIN QKLRAYEISR LKYYFAVAEC 301: DSSATADYLY KSCDGIEFER SSNKLDLRFI PDSMEFKHPP RDIASEAPAG YEGLDFQSRA LQMSKVNLSW DEDEPHRIKT LNQKFNPEQL ANLEMKEFLA 401: SDESDSDEED DLGNEVINQS KKKDKKKDKY RALIEAEDVD SDKDLEEEND QDMEVTFNTG LEDLSKEILK KKDNQSESVW ETYLRQRREK KRARKNKQKD 501: DDSSPDDDDD YNIDRKAVKD DGDDDFFMEE PPLKKKKKEG KTKKEEVAAE EKSRAELELL LADENAGDGN GLKGYNIKRK AKKGKTDISE DKIPAAELDD 601: PRFSALFSSP YYALDPTDPQ FKRSATYARQ LALKQKEDPK GHEDVKAPKE KQELNSDGNL GSKKERHELT STVKSLKMKM MNKDSEKKKA GNPASSSTLA 701: QRIKKKAKDL SKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)