AT2G48060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.948 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19651560..19662386 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 282290.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 2462 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASFLVGFLL PSLLLAAALI NWSVISFLDL IAFLLVHYIA PEIGYRFQRR HWLLWPIFIF SFAVFLAQVV YLVIWAALGQ DWDTPDTGWM RVIGFMILKS 0101: WRNPTVMYFL ALQLLTSLVA LADIYSSRFG FARWRDTWWS HFSGIFEHLG SHLRVASCLL LPAVQLAVGI CNPSWVSLPF FIGSCAGLVD WSLTSNVSGL 0201: FRWWRVLYIY AGFNIVLLYL YQLPINFSDM IRWIASFIGL FRISLETEGP DICSGLFLVL FYIMLSYVRS DLEDMDFIMS TSENNLAERL LPPKYSFFIR 0301: ESRAGVRHTN VLLRGAVFKT FSINFFTYGF PVSLFALSFW SFHFASLCAF GLLAYVGYII YAFPSLFQLH RLNGLLLVFI LLWAVSTYIF NVAFSFLNTK 0401: VGKFGLGMLV ALGNLVNNSV FLYLSEESSR SSNERSYVEA DEETKVLVVA TIAWGLRKCS RAIMLALIFL IAMKPGFFHA VYVIFFLMYL LSHNINRKIR 0501: KSLILLCEVH FALLYILEID LVSNSLKQEG SASREVLFQL GLLRSESSWD FLEIALLACF CAIHNHGFEV LFSFSAIVRH TPSPPIGFSI LKAGLNKSVL 0601: LSVYSSPSSS YSQDNTTYER HIASFLSAIG QKFLSMYRSC GTYIAFITIL ISVYLVKPNY VSFGYIFLLL LWITGRQLFE ETKRRLWFPL KAYAVLVFMF 0701: IYCLSSFVSL QLWLSGFIDL YFYLGYNSKA PLLDNVWESL AVLIVMQLYS YERRQSGHYI PGQSSLLHPG VFGFFERFLA WHGQKILFAA LFYASLSPIS 0801: VFGFVYLLGL VICTTFPKSS SIPSKSFLIY TGFLVSAEYL FQLWGMQAQM FPGQKYAELS FYLGLRVYEP GFWGIESGLR GKVLVVAACT LQYNVFRWLE 0901: RTSGLTVIKG KYEEPCPLFV SAEDTTASVS SSNGENPSST DHASISMKQG EATSNSWPFF SPRGNQGAGF LHPKTGGSES GSSRKFSFGH FWGSIKESHR 1001: WNRRRILALK KERFETQKNL LKIYLKFWIE NMFNLYGLEI NMIALLLASF ALLNAISMVY IALLAACVLL RRRVIQKLWP VVVFLFASIL AIEYVATWNS 1101: FLPSDQAPSE TSVHCHDCWS IAALYFKFCR ECWLGVRVDD PRTLISYFVV FMLACFKLRA DHISSFSESS TYHQMKSQRK NSFVWRDLSF ETKSMWTVLD 1201: YLRLYCYVHL LDVVLILILI TGTLEYDILH LGYLAFALVF ARMRLEILKK KNKIFRFLRV YNFVLIIFSL AYQSPFVGNF NDGKCETVDY IYEVIGFYKY 1301: DYGFRITARS ALVEIIIFML VSLQSYMFSS QEFDYVSRYL EAEQIGAIVR EQEKKAARKT EQLQQIREAE EKKRQRNLQV EKMKSEMLNL RVQLHRMNSD 1401: SNFGVASPRT EGLRRRKSPY LIPDSGAASP EIDGVVHRKE EQPIDEDSQY PFEAHEFPVS TTPEALDSPE YSFGASPCEI TEVQQDLDVM SMERERKQKS 1501: EGKENPLISA VQLIGDGVSQ VQFIGNQAVN NLVNFLNISP ENSDTNEQSS VDDEVYDEME SQKRKHTPFE RSTSLQSDRS SDGTSFQIGR IFRHIWSRMQ 1601: SNNDIVCYCC FIIAFLWNFS LLSMVYLAAL FLYALCVHTG PTHIFWVIML MYTEIYILLQ YLYQIIIQHC GLSIDAPLLH ELGFPTQRIK SSFVVSSLPL 1701: FLIYIFTLIQ SSITVKDGDW VPSADFTSRR NARGSQKDLT RIRLSQRILD VFKKLRDSAK LVIRSIYRYW ISLTRGAESP PYFVQVTMDV HMWPEDGIQP 1801: ERVECRMNQL LRLVHNERCE KGNPDLCPYS SRVHVQSIER STETPNEALV VLEVEYASPT NGCSSAEWYK SLTPASDVAK EIRKAQHSGL GEGTGFPYPI 1901: LSVIGGGKRD TDLYAYIFGA DLIVFFLVAI FYQSVIKNKS EFIDVYQLED QFPFDFVIIL MVIFFLIVVD RVIYLCSFAT GKVVYYLFSL ILFTYAVTEY 2001: AWSIYPTQQH AAGLALRIIF LAKAMSLALQ AIQIRYGLPH KSTLYRQFLT SEVSRINYYG YRLYRALPFL YELRCVLDWS CTATSLTMYD WLKLEDVNAS 2101: LYLVKCDTVL NRATHKHGEK QTKMTKCCNG ICLFFILLCV IWAPMLMYSS GNPTNIANPI KDASVQIDLK TVGGKLTLYQ TTLCERISGD NIDLGLDLGS 2201: QSFLPTYNKN DIQLICCQAD ASVLWLVPDT VVTRFIQSLD WDTDMDITFT WVLNRDRPKG KETVKYERSV DPLDLPKRSD IQMVLNGSMD GFRVHNLYPK 2301: FFRVTGSGDV RSFEDQTDEV SADILINHAN FKWWWSFHNL KASENISACE GMDGPVAIIM SEETPPQGFL GDTLSKFSIW GLYITFVLAV GRFIRLQCSD 2401: LRMRIPYENL PSCDRLIAIC EDLYAARAEG ELGVEEVLYW TLVKIYRSPH MLLEYTKLDY DA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)