AT2G48030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G21530.1); Has 404 Blast hits to 404 proteins in 167 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19647834..19649988 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49199.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.82 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||
| Length | 438 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLNLIAFLRR RLRRPRKARI SVNHHHLSVD SSPETHHHQN GFSSAAAIHP NPDKTITVAT FNAAMFSMAP AVPSNKGLPF RSKSTVDRPK SILKPMNAAA 101: SPTHDSRKQQ RFAKSRPRRV SINLPDNEIS RQLSFREDPQ HSPLRPGEIG LRSTRTALEV LSELDADVLA LQDVKADEAD QMRPLSDLAA ALGMNYVFAE 201: SWAPEYGNAI LSKWPIKSSN VLRIFDHTDF RNVLKASIEV PGSGEVEFHC THLDHLDEKW RMKQVDAIIQ STNVPHILAG ALNSLDESDY SPERWTDIVK 301: YYEEMGKPIP KAQVMRFLKS KEYTDAKDFA GECESVVVVA KGQSVQGTCK YGTRVDYILA SSDSPYRFVP GSYSVLSSKG TSDHHIVKVD VVKATSINVN 401: EQEQRPIRSH KLQRITATTY NNNSSLTKAS WRTHYYKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)