AT2G47860.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.937 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19599979..19602088 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73850.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 658 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKVTKFNK LRRKKRNCFT QTRSLLQFPL VSRSGRIRKL VLESKDTNLN 101: LAAVPGGSES FELAAKFCYG VGVQYNSSNI AALRCVAHYL EMTEDLSEKN LEARTEAYLK DSIFNDISNS ITVLHSCERL LPVAEEINLV GRLVNAIAVN 201: ACKEQLASGL LKLDQSFSCG VPETAKPCDW WGRSLPILKL DFFQRVLSAM KSKGLNHDII SDILMSYARK SLQIIREPNL VKSDSDLQRK QRIVLEAVVG 301: LLPTQANKSS IPISFLSSLL KTAIGSGTSV SCRSDLERRI SHLLDQAILE DILIPANIGA MYDTDSVQRI FSMFLNLDEC EYRDDDDDEE DAVDESEMAM 401: YDFEGAESPK QSSIFKVSKL MDSYLAEVAL DSSLPPSKFI ALAELLPDHA RVVCDGLYRA VDIFLKVHPH MKDSERYRLC KTVSCKKLSQ DASSHAAQNE 501: RLPVQIAVQV LFYEQTRLKN AMTSGGGTGG SNQSQFFLFP NRSGSGMASG AISPRDNYAS VRRENRELRL EVARMRMRLT DLEKDHVSMK RDFVKPQSRR 601: RRYGMLRKLS RGLNKLNAIV LRFRSSQSVA SSGKKHTEEK TNSERRFMFQ KRRCHSVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)