AT2G47160.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 plasma membrane 0.500 ASURE: cytosol,plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HCO3- transporter family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2632 Blast hits to 1400 proteins in 192 species: Archae - 0; Bacteria - 6; Metazoa - 1971; Fungi - 316; Plants - 233; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19357740..19360787 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81437.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.92 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 729 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEETFVPFEG IKNDLKGRLM CYKQDWTGGF KAGFRILAPT TYIFFASAIP VISFGEQLER STGNSAKSFY LALFQLRNLK LDSEIFADGV LTAVQTLAST 101: AICGMIHSII GGQPLLILGV AEPTVIMYTF MFNFAKARPE LGRDLFLAWS GWVCVWTALM LFVLAICGAC SIINRFTRVA GELFGLLIAM LFMQQAIKGL 201: VDEFRIPERE NQKLKEFLPS WRFANGMFAL VLSFGLLLTG LRSRKARSWR YGTGWLRSLI ADYGVPLMVL VWTGVSYIPA GDVPKGIPRR LFSPNPWSPG 301: AYGNWTVVKE MLDVPIVYII GAFIPASMIA VLYYFDHSVA SQLAQQKEFN LRKPSSYHYD LLLLGFLTLM CGLLGVPPSN GVIPQSPMHT KSLATLKYQL 401: LRNRLVATAR RSIKTNASLG QLYDNMQEAY HHMQTPLVYQ QPQGLKELKE STIQATTFTG NLNAPVDETL FDIEKEIDDL LPVEVKEQRV SNLLQSTMVG 501: GCVAAMPILK MIPTSVLWGY FAFMAIESLP GNQFWERILL LFTAPSRRFK VLEDYHATFV ETVPFKTIAM FTLFQTTYLL ICFGLTWIPI AGVMFPLMIM 601: FLIPVRQYLL PRFFKGAHLQ DLDAAEYEEA PALPFNLAAE TEIGSTTSYP GDLEILDEVM TRSRGEFRHT SSPKVTSSSS TPVNNRSLSQ VFSPRVSGIR 701: LGQMSPRVVG NSPKPASCGR SPLNQSSSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)