AT2G47090.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;nucleic acid binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19341444..19344297 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82468.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||
| Length | 743 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWLSCNL CNDTNKTRPK 101: KEPNHCVRFK SVEHLKDHLN HQHKLHMCSL CLVGRKVFIC EQKLFTKGQL NQHISSGDSE VDGSESERGG FTGHPMCEFC KRPFYGDNEL YTHMSREHYT 201: CHICQRLKPG QYEYYGNYDD LEVHFRSDHF LCEDETCLAK KFIVFQIEAE LKRHNAIDHG GRMSRSQQNA SLQIQASFQY PNSRRGRRRS SLREPNLVLL 301: ESQASYAFND DNNLPQHVGR SGNSRLGESS FPPLSVQANQ GQSRFGQNSE SLVSNTTTTR QRHRANQGQS RFGQNSESLV SNTTTTRQRH QTNRSATSGS 401: SQAWPALNRG PAEISITSRV QSSGASAQSQ SRHHDRVEST RTLASAVPQD ARTTVGGCSS GSSLSSANAT KRNNHHSSST PKMSETRSLA QPSHSDSPQI 501: SAVKNRRSSS TSANAGNIQV AQGVSDVQSD NKSLVEKIHA SLGHDEELFM AFKNTSGKYR HGSIDARTYL EYVKGYGLSH LVLDMARLCP DPQRQKELID 601: THNACLKGGN KGKAVKVESS SDSKGDRFVD TVRKLQFSDK SQDKDKDKDA YRSDKGKTKV TTLVNSSSAG VGLGDTGKQP KKTSKFLRTR LGEKSMAAVL 701: DLRNSNPEPE PEPKNDNSKR SQNSPGGLPL RGAWKRGSAK LFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)