AT2G46780.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:19229516..19231043 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36706.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG 101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG 201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT 301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)