AT2G46560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), RAVE protein 1 C-terminal (InterPro:IPR022033), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 2273 Blast hits to 1588 proteins in 291 species: Archae - 0; Bacteria - 657; Metazoa - 469; Fungi - 690; Plants - 137; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19115570..19125856 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 275532.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 2513 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRYRIQLKPS GLERGSGDPR TDRIDHLPLR QLRSEIVPPA PTRSQSSIDW LPDFANYSWL AYGASTLVVI SHLPSPLRGE DSTNGPFFRQ ILEVSGEPVT 0101: AVCWSPVTPS VGELAVGSGN YIFLFARDLK GSFCWSQNAI LVQETIVEAI EWTGSGDGII VGGTDIVLWK RRNQSWEIAW KFSGDHLQDL VSSTWSFEGP 0201: FATATSWRKF PAECDDAGKS VLAYYSDGES YHNFELPHPQ RISMIQWRPM AAEQSAIGIG KSMRNVLMTC CLDGAVRLWC EVDGGKTKKG MKDVPDHKKS 0301: FCVAAVIEIN QVLDGCLGRD LFLFWGTRTG GIFKTIEGTN QVFSMEKYDN ENVGKCEWLV GYGPGNFATL WAVHCLDDIS PMRFPRVTLW AKQESNEIGA 0401: GSLSLASATG SSDRLPLKKV SVLRNNLYGT PLICSSIYLS PQNTVYWSSL HTIKSHDSED SSPNKSSLLK CIDGKVLYLD GHGGKILQVA SDPFVCEAGY 0501: TASLDSNGLI IICSSSVYLN RTIEHPISVA SWKPCGRLQN QEFRLKYTSL CWAPSSLKDE RFLLVGHVGG VDCFSVRNCG KGDDGYLTHY ICTIPFTVNS 0601: PLQSGPTSIF AKPLSNSCGK TFKSNRFLLL SVWMKEKRFD ALSWSVTLHH FDTAGSTCDC HFHDFDSIGL GKWLFEDTFA GKTNCLAIRS CSSEIPESHR 0701: EDEVTSFAVV NPSGRDLENG VNSESQAYTI ATGQADGSLK LWRSSFQESS TPSGLWELVG MLTVGQNPVS AISLTDSGHK IAALCTESHS KAARAVSIWE 0801: IVHLIDSGVF ILEDKVHVDA EVVAVRWSTT GNDQLLLGVC TQIEMRVYGI ARQPCKSTSF AAYDYSSEAQ IWQCFAVTRT FSAIHDLWWG PKAMTCLVHN 0901: DYISLHGQWL AVVDKKQKID NYPEIFASNL PNLVNATEEG RDSEFLSDSG TNDINEADTT STSRGCIPLP STSNAIDDGQ VNSMSLIGTA YGSNTIDDIM 1001: SMGHMVEKLG GALPLYHPHA LLVAIRSGNW KRASAALRHL AEYITSSDTS EKGYAVKSVL CPDILLSKYY EGSLSNGPNP KDFQWGGTSG SMLQYSQFQS 1101: GLQSKFNMES YSPNSPATDL EFSGFCEQLK KLSDEGNISR IEILQYFAIV DLLCEISNPH STSVYASLDE PGRRFWVTLR FKQLFLARSS GKTASLEELD 1201: IDSSMIGWAF HSESQENLSG SLLPNESSWQ QMRSQGFGFW YSNAAQLRSR MEKLARQQYL KNKNPKDCAL LYIALNRVQV LAGLFKLSKD EKDKPLVVFL 1301: SRNFQEEKNK AAALKNAYVL MGKHQLELAI GFFLLGGEAS SAINVCVKNL QDEQLALVIC RLIDGQGGAL ESNLIKKYIL PSAVQRGDFW LASLLKWELG 1401: EYHRSILAMA GCLENPATES STVSSNHVSF VDPSIGLYCL MLATKNSVKN ALGERTASTL SRWASLMAAT AFSRCGLPLE ALECLSPSAS GHGGTHQTSV 1501: PSNGQLHTTQ GVFDHSVPHS SNWVSSGVSS TVDTHFRLGL AVQFLSMILR EATAPLMNSE VVSCEKFSRF QHKLQTALEQ FHQRFSLSAS YLRNMMILSA 1601: YNRGLLSMGH NIFQENSSSG LSDDKSHTDE DLLQYSALSK LILKATDEKS LVLSRIIAAC SVTCLHSVPC FEENKVSSGP DPKWSNALRF YFQGILESFS 1701: NLRTSIRLCL GSSVEDLKTK LAVVLDLVEY CLRLAMAWVL GDVHCLFRMV QPLVISYFNG HMPYEVDLES VKRVYHQEAS VSVPDASDVG VNSKFSSVVE 1801: NHGVGYPVYS IPEDERCLVT QACFWKHVSD FVKLKLVSIS INLDDGISNS GSAENFDAQT SLDSSDDIVC VTEKIMSVLG KTLISTLAQL SSYHVKQLVL 1901: VLKQKLEKRL QVPTLLWLLE CQGSQANFLN RDIPDAGVET EKNGDPVVSV RFWKLCVDPH LLHEAFLLEN FDIFEWSKSK PLEDWSDMYR EVIRKNELYV 2001: PCNQDGRSSN EVASLANHAS NSSPKAAVTA NENSAFQNPK EIHKRTGELI EALCINAINH RQAALASNRK GIIFFNLEDG DSSQNQSDYI WSDADWPHNG 2101: WANSESTPVP TCVSLGVGLG DKKGAHLGLG GATVGVVSLS KPGKADRVPG YSGLGAIADP GSFFTQIRRW LGVSGLGWET QEEFEEFVDP PPTVESVITR 2201: AFSNHPTMPL FLVGSSNTHI YLWEFGNERA TATYGVLPAA NVSPPYALAS ISAVQFGPFG HRFASAALDG TVCTWQSEVG GRSNIHPVES SLCFNGHASD 2301: VGYISSSGSI VAASGYSSSG ANVVVWDTLA PPSTSQASIN CHEGGARSIS VFDNDIGSGS ISPMIVTGGK NGDVGLHDFR FIATGKMKKQ RNPDGGSSTD 2401: GDQNKNGMLW YIPKAHLGSV TKIATIPRTS LFLTGSKDGE VKLWDAKAAK LIHHWPKLHE RHTFLQPNSR GYGGIIRAGV TDIQVCPNGF ITCGGDGTVK 2501: FVSLVDSSYG DAK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)