AT2G45840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.521 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis thaliana protein of unknown function (DUF821) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18869286..18871487 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61513.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSHVVDDQR QPNNSISSLS SKLTKPWITT TIFIFVFFFF IILVGASLRW MDMFLIGGGR IKVTPIFTRN TNATIPKEKL TTPLNFTLQC SLDQNIATQT 101: CPASNPEKSQ PSKDEPETCP DYFRWIHKDL EAWRETGITR ETLERASDKA HFRLIIKGGR VYVHQYKKSF QTRDVFTIWG IVQLLRMYPG QVPDLELLFM 201: CHDSPEIWRR DYRPRPGVNV TWPPPPLFHY CGHSGAFDIV FPDWSFWGWP EINIKEWNKQ SELISEGIKK VKWEEREPYA YWKGNPGVAM VRRDLMHCHD 301: PMVHLYRQDW SREGRIGYRT SNLEDQCTHR YKIYVEGRAW SVSEKYILAC DSMTLLVKPF YFDFFTRSLV PMEHYWPIRP QEKCSDIVFA VHWGNNNTKK 401: ARAIGRNGSG YVRKNLKMKY VYDYMLHLLQ SYGKLMKMNV EVPQGAKEVC PETMACPING GRMRQSMDDS LVMSPSVKAT CEMPPPFEED ELKKFLEKKE 501: SVEKEVEKWT NEYWQEQKKI LKH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)