AT2G45350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CHLORORESPIRATORY REDUCTION 4 (CRR4); INVOLVED IN: mRNA modification; LOCATED IN: chloroplast, vacuole; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 36388 Blast hits to 13274 proteins in 208 species: Archae - 0; Bacteria - 3; Metazoa - 67; Fungi - 16; Plants - 35908; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18694816..18696657 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69189.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 613 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVFKSTMEC SISSTIHVLG SCKTSDDVNQ IHGRLIKTGI IKNSNLTTRI VLAFASSRRP YLADFARCVF HEYHVCSFSF GEVEDPFLWN AVIKSHSHGK 101: DPRQALLLLC LMLENGVSVD KFSLSLVLKA CSRLGFVKGG MQIHGFLKKT GLWSDLFLQN CLIGLYLKCG CLGLSRQMFD RMPKRDSVSY NSMIDGYVKC 201: GLIVSARELF DLMPMEMKNL ISWNSMISGY AQTSDGVDIA SKLFADMPEK DLISWNSMID GYVKHGRIED AKGLFDVMPR RDVVTWATMI DGYAKLGFVH 301: HAKTLFDQMP HRDVVAYNSM MAGYVQNKYH MEALEIFSDM EKESHLLPDD TTLVIVLPAI AQLGRLSKAI DMHLYIVEKQ FYLGGKLGVA LIDMYSKCGS 401: IQHAMLVFEG IENKSIDHWN AMIGGLAIHG LGESAFDMLL QIERLSLKPD DITFVGVLNA CSHSGLVKEG LLCFELMRRK HKIEPRLQHY GCMVDILSRS 501: GSIELAKNLI EEMPVEPNDV IWRTFLTACS HHKEFETGEL VAKHLILQAG YNPSSYVLLS NMYASFGMWK DVRRVRTMMK ERKIEKIPGC SWIELDGRVH 601: EFFVDSIEVS STL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)