AT2G45330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA 2'-phosphotransferase, Tpt1 / KptA family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 1059 Blast hits to 1053 proteins in 477 species: Archae - 87; Bacteria - 561; Metazoa - 92; Fungi - 143; Plants - 80; Viruses - 6; Other Eukaryotes - 90 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18686340..18687874 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32302.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 289 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLRLCRHRL PLPLTLSSSV FFSKSSPVSS AFMDASNPNS SRKSNVSSFA QSSRSGGRGG GYERDNDRRR PQGRGDGGGG KDRIDALGRL LTRILRHMAT 101: ELRLNMRGDG FVKVEDLLNL NLKTSANIQL KSHTIDEIRE AVRRDNKQRF SLIDENGELL IRANQGHSIT TVESEKLLKP ILSPEEAPVC VHGTYRKNLE 201: SILASGLKRM NRMHVHFSCG LPTDGEVISG MRRNVNVIIF LDIKKALEDG IAFYISDNKV ILTEGIDGVL PVDYFQKIES WPDRQSIPF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)