AT2G44980.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.768 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18552343..18556669 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98872.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 877 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLELDQMG LGKTLQAISF LSYLKFRQGL 101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHV KKSSKGHFLP FDVLLTTYDI ALVDQDFLSQ IPWQYAIIDE AQRLKNPNSV 201: LYNVLLEQFL IPRRLLITGT PIQNNLTELW ALMHFCMPLV FGTLDQFLSA FKETGDGLSG LDVSNDKETY KSLKFILGAF MLRRTKSLLI ESGNLVLPPL 301: TELTVMVPLV SLQKKIYTSI LRKELPGLLE LSSGGSNHTS LQNIVIQLRK ACSHPYLFPG IEPEPFEEGE HLVQASGKLL VLDQLLKRLH DSGHRVLLFS 401: QMTSTLDILQ DFMELRRYSY ERLDGSVRAE ERFAAIKNFS AKTERGLDSE VDGSNAFVFM ISTRAGGVGL NLVAADTVIF YEQDWNPQVD KQALQRAHRI 501: GQISHVLSIN LVTEHSVEEV ILRRAERKLQ LSHNVVGDNM EEKEEDGGDL RSLVFGLQRF DPEEIHNEES DNLKMVEISS LAEKVVAIRQ NVEPDKEERR 601: FEINSSDTLL GNTSSASLDS ELDEASYLSW VEKLKEAARS SKDEKIIELG NRKNLSEERN LRIEAARKKA EEKKLATWGA HGYQSLSVEE PILPDDVDSS 701: SDAGSVNFVF GDCTNPSTVS HEPAIIFSCV DDSGNWGRGG MFDALSKLSN TVPTAYHRAS EFKDLHLGDL HLIKIDDNDD QQNTQASKPL WVAVAVTQSY 801: NSRRKVPRSS ISIPDLESCL AKASFSASQK SASLHMPRIG YQDGSDRSQW YTVERLLRKY SSIFTVKIFV YYYRRSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)