AT2G44980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18552440..18556669 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95884.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 851 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLELDQMG LGKTLQAISF LSYLKFRQGL 101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHG HFLPFDVLLT TYDIALVDQD FLSQIPWQYA IIDEAQRLKN PNSVLYNVLL 201: EQFLIPRRLL ITGTPIQNNL TELWALMHFC MPLVFGTLDQ FLSAFKETGD GLDVSNDKET YKSLKFILGA FMLRRTKSLL IESGNLVLPP LTELTVMVPL 301: VSLQKKIYTS ILRKELPGLL ELSSGGSNHT SLQNIVIQLR KACSHPYLFP GIEPEPFEEG EHLVQASGKL LVLDQLLKRL HDSGHRVLLF SQMTSTLDIL 401: QDFMELRRYS YERLDGSVRA EERFAAIKNF SVDGSNAFVF MISTRAGGVG LNLVAADTVI FYEQDWNPQV DKQALQRAHR IGQISHVLSI NLVTEHSVEE 501: VILRRAERKL QLSHNVVGDN MEEKEEDGGD LRSLVFGLQR FDPEEIHNEE SDNLKMVEIS SLAEKVVAIR QNVEPDKEER RFEINSSDTL LGNTSSASLD 601: SELDEASYLS WVEKLKEAAR SSKDEKIIEL GNRKNLSEER NLRIEAARKK AEEKKLATWG AHGYQSLSVE EPILPDDVDS SSDAGSVNFV FGDCTNPSTV 701: SHEPAIIFSC VDDSGNWGRG GMFDALSKLS NTVPTAYHRA SEFKDLHLGD LHLIKIDDND DQQNTQASKP LWVAVAVTQS YNSRRKVPRS SISIPDLESC 801: LAKASFSASQ KSASLHMPRI GYQDGSDRSQ WYTVERLLRK YSSIFTVKIF V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)