AT2G44930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT2G28580.1); Has 1033 Blast hits to 968 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1031; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18529700..18531671 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59212.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKEKQPLME DLEQGIQLST RENETGSGKV GRWSEGFRDP LVSKHGTAEK AKIVSVTTKP YKPDSCYESE ISGIWPSSFS KEYCCIYRVP NRLRRVNPEA 101: YTPQMLLIGP LQHSKKANAL ELSKTDLRYL DYMNMELHKK KYLNAIANKY GDQIIEVFKE IIETSEKFVR ESYAESTDWI KPQDFVDMIL LDSVFILGVF 201: IQAETTQNIK KKEEILFHEE DIIFQEPCLI TTILEDLILL ENQLPYVLLE KLSKPFFANL KTKETFRDII LRAFRLKGEI KEGTNFRHFT DLFRRVRVET 301: LCLTKEQIKS AKDKPPEIIK SLHNADKLDS AGVDFVRLER KNDLSLVITF ERGILEIPCF LADDNTERIM RNLMALEQCH YPLTAYVCNY IAFLDFLIDT 401: DQDVDLLVKK GVIKNWLGHQ ASVAEMVNKL CLGLVDFGSH YYGIADRLNK HYESRRNRSI ATLRRVYFKD LWTGTATIAA AVILVLTLIG TVASVLQVTQ 501: KDNNSPPPPA MFRGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)