AT2G44590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DYNAMIN-like 1D | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DYNAMIN-like 1D (DL1D); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1E (TAIR:AT3G60190.1); Has 2767 Blast hits to 2641 proteins in 298 species: Archae - 0; Bacteria - 8; Metazoa - 1053; Fungi - 825; Plants - 570; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18403856..18406961 | ||||||||||||||||
| Molecular Weight (calculated) | 66757.60 Da | ||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||
| Length | 596 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLIVLINT IQRACTVVGD HGGDSNALSS LWEALPSVAV VGGQSSGKSS VLESIVGRDF LPRGSGIVTR RPLVLQLHKT ENGTEDNAEF LHLTNKKFTN 101: FSLVRKEIED ETDRITGKNK QISSIPIHLS IFSPNEGQPE TIVEDIESMV RSYVEKPNCL ILAISPANQD IATSDAMKLA KEVDPIGDRT FGVLTKLDLM 201: DKGTNALDVI NGRSYKLKYP WVGIVNRSQA DINKNVDMMV ARRKEREYFE TSPDYGHLAT RMGSEYLAKL LSKLLESVIR SRIPSILSLI NNNIEELERE 301: LDQLGRPIAI DAGAQLYTIL GMCRAFEKIF KEHLDGGRPG GARIYGIFDY NLPTAIKKLP FDRHLSLQSV KRIVSESDGY QPHLIAPELG YRRLIEGSLN 401: HFRGPAEASV NAIHLILKEL VRKAIAETEE LKRFPSLQIE LVAAANSSLD KFREESMKSV LRLVDMESSY LTVDFFRKLH VESQNMSLSS PTSAIDQYGD 501: GHFRKIASNV AAYIKMVAET LVNTIPKAVV HCQVRQAKLS LLNYFYAQIS QSQQGKRLGQ LLDENPALME RRMQCAKRLE LYKKARDEID AAVWVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)