AT2G44260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.628 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF946) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT2G44230.1); Has 353 Blast hits to 327 proteins in 90 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 113; Plants - 198; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18295988..18297739 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 60956.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||
| Length | 553 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNCLSTSDP SHEDVSKKLP KALPVDAAFK FPSPLPTFTR GDGFAKGTID LGGGLEVSQV STFNKVWSTY EGGPDNLGAT FFEPSSIPSG FSILGYYAQP 101: NNRNLFGWVL TARDLSSNTL KPPVDYTLVG NTESLKIKQD GTGYFWQPVP PDGYQAVGLI VTNYSQKPPL DKLRCIRSDL TEQCEADTWI WGTNGVNISN 201: LKPTTRGTQA TGVYVGTFTW QTQNSSPPSL SCLKNTKLDF STMPNGSQIE ELFQTFSPCI YFHPDEEYLP SSVTWYFNNG ALLYKKGEES KPIPIESNGS 301: NLPQGGSNDG SYWLDLPIDK NGKERVKKGD LQSTKVYLHI KPMLGATFTD ISIWIFYPFN GPAKAKVKFV NLPLGRIGEH IGDWEHTTLR ISNFTGELWR 401: VFLSQHSGGI WIDACDLEFQ DGGNNKFVAY ASLHGHAMYP KPGLVLQGDD GVGIRNDTGK GKKVLDTGLG YEVIAAEYDG GGVVEPPWVK YFRKWGPKID 501: YNVDDEVKSV ERILPGLLKK AFVKFVKKIP DEVYGEDGPT GPKLKSNWAG DES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)