AT2G43890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05650.1); Has 3985 Blast hits to 3965 proteins in 478 species: Archae - 4; Bacteria - 1086; Metazoa - 14; Fungi - 1267; Plants - 1489; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18176924..18178390 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42010.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.24 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 392 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNNKLVAVL LMFFSSFLLM KSSTAASNYN VVSFGAKPDG RTDSTKAFLG AWQAACRSAA AVTVTVPRGS FLLKPVEFRG PCRSRITFQI YGTIVAPSDY 101: RGLGNSGYWI LFVKVNRISI IGGTLDARGA SFWACRKSGK SCPVGARSMT FNWANDVVVS GLTSINSQTT HLVINSCNNV IVRKVKLVAP DQSPNTDGLH 201: VQGSAGVTVT DGTFHTGDDC ISIGPGTRNL YMSKLNCGPG HGISIGSLGR DANEAGVENI TLINSVFSGS DNGVRIKTWA RQSTGFVRNV LFQNLIMKNV 301: QNPIIVDQNY CPSNQGCPKQ GSGVKISQVV YRNIQGTSRT QQALTFDCSR SNPCQAIRLH DIKLTFNGRS ATSTCKNIKG VKAGVVMPQG CL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)