AT2G43220.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.481 nucleus 0.324 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G45730.1); Has 1495 Blast hits to 745 proteins in 41 species: Archae - 0; Bacteria - 3; Metazoa - 111; Fungi - 0; Plants - 1367; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:17964340..17965956 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62440.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 538 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKTLDLFWH EHPLYEKYRM FTCQECHRSA IPFFEVFYGC FRCNIKWHPY CVPRSTKNIN HPCHPNHPLE VLLQGPPSYS DEKCSLCQRK LSNFVYHCKL 101: CNFSIDMECG NRPPPHKVDH PKCHEHALTL MGREVSFTCN ACGTHGERNP YVCLPCSVMF HYDCIDLPHV ININRHDHRI SHSYPLKRGN WVCEICRQDI 201: NTTYGGYSCN KCPDFFVHSK CATRKDVWDG TELEGIPEEV VDVAPFEVIE EGVIYHFSHE KHNLFLIEDV FIDGAEDMHC EACARPVSSE KHYKCVECKF 301: ILHEECANLP LTKRHGLSTG IFYLRFGKDF SEQNFSCDAC NRDGRGFSYK DEEGVVLDVL CASLSFFKHP KLHPHTLFLT TIDRGTCLAC GENKLNVLRC 401: VDCDYSLDYK CATLPLVIKH RCDTHYLVLR SGEEAPEGKY WCEICEAETN PERWFYTCDD CGVVCHIECV TGDFLNIKPG IIMKNRENKF EVGFNDHDSR 501: PKCTDCGSRC RFPRFFKVTR KNIEYYYCSK ACFQNAKF |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)