AT2G43140.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G05805.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17931680..17935639 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33805.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYPPNSSKST AHDGGGDADT NQYDSAAGAT RDFSSLGPQT HHHPPPQRQQ QHQQNPNLVG HYLPGEPSSI GFDSNASSSS SLFRHRSSPA GFYDQHLPTD 101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL 201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER 301: CTCGACKKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)