AT2G42980.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G59080.1); Has 2669 Blast hits to 2647 proteins in 228 species: Archae - 0; Bacteria - 4; Metazoa - 402; Fungi - 186; Plants - 1940; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:17875005..17876588 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58652.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSTKLSIFLL GLILFSVSPF SGDCRTLSGK HEHYSSSLNM FNSQDTMRFS SASSSTSNDC GFSSKEHDPS KEHTRESVKP QSRIKQETKR TTHSVVDLQI 101: QDLTRIKTLH ARFNKSKKQK NEKVRKKITS DISLVGAPEV SPGKLIATLE SGMTLGSGEY FMDVLVGTPP KHFSLILDTG SDLNWLQCLP CYDCFHQNGM 201: FYDPKTSASF KNITCNDPRC SLISSPDPPV QCESDNQSCP YFYWYGDRSN TTGDFAVETF TVNLTTTEGG SSEYKVGNMM FGCGHWNRGL FSGASGLLGL 301: GRGPLSFSSQ LQSLYGHSFS YCLVDRNSNT NVSSKLIFGE DKDLLNHTNL NFTSFVNGKE NSVETFYYIQ IKSILVGGKA LDIPEETWNI SSDGDGGTII 401: DSGTTLSYFA EPAYEIIKNK FAEKMKENYP IFRDFPVLDP CFNVSGIEEN NIHLPELGIA FVDGTVWNFP AENSFIWLSE DLVCLAILGT PKSTFSIIGN 501: YQQQNFHILY DTKRSRLGFT PTKCADI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)