AT2G42810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein phosphatase 5.2 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes to the cytoplasm in darkness and in the nucleus in light. The gene is alternately spliced. This variant does not contain membrane domains. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PROTEIN PHOSPHATASE 5 (PP5); FUNCTIONS IN: protein binding, phosphoprotein phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: response to cadmium ion, nucleocytoplasmic transport, red or far-red light signaling pathway; LOCATED IN: nuclear envelope, integral to endoplasmic reticulum membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Metallophosphoesterase (InterPro:IPR004843), Tetratricopeptide-like helical (InterPro:IPR011990), Protein phosphatase 5 (InterPro:IPR011236), Serine/threonine phosphatase, PPP5 (InterPro:IPR013235), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 25788 Blast hits to 18302 proteins in 1121 species: Archae - 994; Bacteria - 7255; Metazoa - 6041; Fungi - 2745; Plants - 2732; Viruses - 0; Other Eukaryotes - 6021 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17812336..17815896 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54705.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METKNENSDV SRAEEFKSQA NEAFKGHKYS SAIDLYTKAI ELNSNNAVYW ANRAFAHTKL EEYGSAIQDA SKAIEVDSRY SKGYYRRGAA YLAMGKFKDA 101: LKDFQQVKRL SPNDPDATRK LKECEKAVMK LKFEEAISVP VSERRSVAES IDFHTIEVEP QYSGARIEGE EVTLDFVKTM MEDFKNQKTL HKRYAYQIVL 201: QTRQILLALP SLVDISVPHG KHITVCGDVH GQFYDLLNIF ELNGLPSEEN PYLFNGDFVD RGSFSVEIIL TLFAFKCMCP SSIYLARGNH ESKSMNKIYG 301: FEGEVRSKLS EKFVDLFAEV FCYLPLAHVI NGKVFVVHGG LFSVDGVKLS DIRAIDRFCE PPEEGLMCEL LWSDPQPLPG RGPSKRGVGL SFGGDVTKRF 401: LQDNNLDLLV RSHEVKDEGY EVEHDGKLIT VFSAPNYCDQ MGNKGAFIRF EAPDMKPNIV TFSAVPHPDV KPMAYANNFL RMFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)