AT2G42730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT2G42720.1); Has 2687 Blast hits to 2614 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 138; Plants - 2100; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17787454..17791218 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83866.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 737 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNAKDVISRL PDEVLGRILS LISTKEAVST SVLSKRWKNM FVLVSNLDID DRQSVPKTKQ NRIEIHRNYM AFVDKLLDTQ RGSSIKKLTL KSHVGVRGGT 101: DSSRIQSWIC NVLDHGVMDL DVFITLKGKS PPVPAMIFKS KTLVKLRVGR GFTIKLSQDV SLPLLRTLCL DSVNFVGGHN VVGTLISRCP VLEELVVEER 201: RCVDWTCSVS SPSLKRLHIR FDRKFTSISL DAPNLIYYKH SGYVLGKYPN VKLDSLIEAR LNLRMDETRM VGVRNGSLGS IPADMRNLIN GIRNVRILHL 301: SSHTLELLYF SCKEMPLFDS LVSLSIGNDK ARGWQMLPLL IKNSPNLETL IFMGLDHYIT NRCGDVCVCY DTDESITSCL SSSQVKVLEI LSYQGTTREL 401: NQMKHFLEKL PCLELVKICV VNNSNNLQTT MEMRNLMMLP RASSKYRERE RPFQQLPNYL LLRCFETLVT SRERESKQTH TKDRSELRTT MQKQEFLELY 501: EAALRAAKSV KGVKNSSKVS RFVDARNRLK DAPTSLACEV VSKTSMGKGL SFLNDHKNPH IRSEGRLLRD LWMKILYASG REKSHDRETQ VKIPTHSTMK 601: KTGDSKRDKV REILQTSLVK VASEIVDTEM KTRVTACDPS VVAVSVESAM FEKLGCFMGP HKAKYRSILF NMGDSNNPDL RRKVLIGEIN GERLVTMERQ 701: EMGSEKIQKE VQRIKENARF KEESRMKILQ SASMIMT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)