AT2G42710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein L1p/L10e family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT3G63490.1); Has 9261 Blast hits to 9236 proteins in 2822 species: Archae - 147; Bacteria - 5388; Metazoa - 398; Fungi - 257; Plants - 180; Viruses - 2; Other Eukaryotes - 2889 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17782352..17784830 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45782.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.19 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAMKLLLSQ ARRQGLIKPF SSPFQQIPRL FSSSSSSSSS SSSSSDSNPS PDSNESRKKA VTIEPVSYAA KPKDQKSEPK NVESTENLQS PESANWTREE 101: IRYVKDSPSI NPVSYAQRVA PLPEDRVAGE NEGDRTPEEM ERERKRIELE NRARRRFLRA NAVEEDTSSL PLPTLLKPEL KHGKKPIFDL MEAIREIKGN 201: AKAKFDETLE AHVRLGIEKG RSELIVRGTL ALPHSVKKDV KVAFFAEGAD AEDAKAAGAD VVGGLELIEE ILKSGKIDFD RCLATPKMMP RVYKISRILN 301: NHGLMPNPKQ GSVTKDVTKA VKDAKAGHTK FRMDKTSILH VPLGKMSFSE EALRENVGAF MNALLLAKPA GLKKTSKYAG YVNAFHLCST MGKGYPVSIQ 401: SLSRAADLHT KLQLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)