AT2G42650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein L1p/L10e family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein L1p/L10e family; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT3G58660.1); Has 1164 Blast hits to 1162 proteins in 304 species: Archae - 34; Bacteria - 0; Metazoa - 441; Fungi - 309; Plants - 224; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17765530..17766648 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41691.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRVSPKTVD DAVKALVKEG NEKSRTEKPQ LLEEDGFFYL VVALKKIPQR NFTNAYRIPL PHPLINTTED SPELCLIIDD RPESGLTEED AKKNIKSENI 101: PITKVVKLSK LKSDYGSFES KRKLCDSYDM FFSDRRVIPM LPKLIGKKFF QSKKTPVAID LKHMNWKEQI EKACGAAMFF MRTGSCSAIK VAKLSMESDD 201: IVENVTATLN GVVDVLPSRW KYIRSLHLKL SESLSLPLYQ TVPYLQLKID PLGVEEVKNG EGLAKSDVDD SSSKSVKTKK KNGKIHEVRY MDSNVSETLG 301: DDEFDRSVGE DEVADDLNAS GDKKKRKKMS SSKSAVSGKP DIVKSKNGQK SKKLKKDIDE SGGGFKAKTK RR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)