AT2G42510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.511 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 358 Blast hits to 335 proteins in 89 species: Archae - 4; Bacteria - 46; Metazoa - 66; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17701686..17704255 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 59498.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||
| Length | 532 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATRFDTGES IGSGKTSISR DEFAEDSLKI VSLPPVENDD SVEEMISPKK QVKSSPFTSV FEKDGEIIHS DSIDISFSET TLEETVAMNV ECPGVVVVSV 101: PENGSTILEE NKVGEEIKES SEISTTEGDR LGDDVLKIKD VVETDGFVVS ISDMKESLNS EKKGQDSDGQ RIVEAEKIIL FAEIGDGSTF LEENKELQQI 201: KEVSEISTES DQFGDDVYKI EDDCVGSISD MKEILNSQKK GQDSDVQILW ETEKKNDGDT LARASDIHKI EKNGNGSKDQ REKVERVRVK DNAFVGRSVN 301: IDLVDDTALF DVVPFYKKGK DHSKRPVTAH TDKDAPRKHK KVGVEKPIDK GNASSIVERN ASTKVSDFRN SGEMNGKQLR IMYSRNQMES MRLLPELVTE 401: YEGLKNHKSI LEDYVVKEEK TEDNDDYNSI LRPAFAVDGE PDFDSGPPED GIEYLRRVRW EAKRIPNVKV AKVSGSKYRE KEQSVYMPQI PRAPATGEGM 501: GGLVAFRLLT HSSGFKTKWQ RVFRRCTHGD IQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)