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AT2G42490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:23750852 (2013): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Copper amine oxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1554 Blast hits to 1550 proteins in 277 species: Archae - 14; Bacteria - 379; Metazoa - 243; Fungi - 461; Plants - 232; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1154-MONOMERBRENDA:1.4.3.21EC:1.4.3.-eggNOG:COG3733
eggNOG:KOG1186EMBL:AY120717EMBL:BT000029EMBL:CP002685
EnsemblPlants:AT2G42490EnsemblPlants:AT2G42490.1entrez:818849Gene3D:2.70.98.20
GeneID:818849GO:GO:0005507GO:GO:0005777GO:GO:0008131
GO:GO:0009308GO:GO:0048038Gramene:AT2G42490.1hmmpanther:PTHR10638
hmmpanther:PTHR10638:SF34HOGENOM:HOG000250947IntAct:Q8L866InterPro:IPR000269
InterPro:IPR015798InterPro:IPR015802InterPro:IPR016182KEGG:00260+1.4.3.21
KEGG:00350+1.4.3.21KEGG:00360+1.4.3.21KEGG:00410+1.4.3.21KEGG:00950+1.4.3.21
KEGG:00960+1.4.3.21KEGG:ath:AT2G42490KO:K00276OMA:YNRQSNE
PANTHER:PTHR10638Pfam:PF01179Pfam:PF02728PhylomeDB:Q8L866
Proteomes:UP000006548RefSeq:NP_181777.2SMR:Q8L866STRING:3702.AT2G42490.1
SUPFAM:SSF49998SUPFAM:SSF54416TAIR:AT2G42490UniGene:At.20753
UniProt:Q8L866
Coordinates (TAIR10) chr2:-:17691600..17695526
Molecular Weight (calculated) 86695.50 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.36
Length 776 amino acids
Sequence (TAIR10)
(BLAST)
001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)