AT2G42480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.904 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1); Has 20820 Blast hits to 13670 proteins in 1127 species: Archae - 516; Bacteria - 2848; Metazoa - 7681; Fungi - 1563; Plants - 1737; Viruses - 68; Other Eukaryotes - 6407 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17685805..17689851 | ||||||||
| Molecular Weight (calculated) | 86425.90 Da | ||||||||
| IEP (calculated) | 5.04 | ||||||||
| GRAVY (calculated) | -0.68 | ||||||||
| Length | 743 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MWNQKPCFRF EIDNFSEKKD VIASKAFVSG GCEWFLYLYP KGQSLNDDHM SLYLSVANSK SLGSGWKRSA KFYFSVLNES DKELYRSTIS QEFCLFCVQA 101: LAWGIRKALP LSKFEEKGFL EKDKLIVEVY IKNFEAVDGE GGGVSKKEEE ETVEIIGSQD YASQASFKGS VTLVRKIFAE HPEIAEEFKP KNQVFKKEYM 201: NILRNAYRKV SELAEVKMDW VKSKIEEVSL EIKKRNDEVS EVPLDNKIAD DDDDDYDEWE QDIEERLKNL EGMEFDSKLD SLKSKLDEIS LERKKSYDAD 301: GSRVQQLEER VKDIELILKS KLEEVSSEKK KKADADGSLE DRVKNLELMV SDLKVEVDNE KAKSSADGFL LVEESLRIKA SKRDMENHQK TSFTFEIENF 401: SERKYLIWSP IFISGQCHWF VKVYPIKDNN YDHVSVYLHV ANPQSLRPGW KRRAHFSLIL SNQSGKEVKI PSDSCDLFCT ELSSSYPKIL PPIKLKEEGF 501: LENDKLIITV EVKVVEVVHP GELTGKEMVE FKELQDLYNG VQQNKEVVKN CELMNMDMKQ DSLKSNHHEV SLKDKKRDDA DESRFQKLEE RLKNLELMEL 601: DCLKSKLEEV SIKNKKADAD RSRVQRLEER LKNLELMDLD CLKSKLELVS IKNKKADADR SRIQRLEERV KKLELMELDD LKSKLEEVSL ERKKSDDAYR 701: SRVYQLEECF KNLELMVLDF KVELDKKKDK SCDDGFLLVD EFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)