AT2G42470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.944 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42460.1); Has 4717 Blast hits to 3206 proteins in 385 species: Archae - 74; Bacteria - 290; Metazoa - 1909; Fungi - 361; Plants - 1476; Viruses - 11; Other Eukaryotes - 596 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17679887..17685187 | ||||||||||||
| Molecular Weight (calculated) | 103078.00 Da | ||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||
| Length | 898 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSINIKQTCE ILPSNKSLRK RLGRDMENHE QTSFTFEIDN FLEKGDAISP IFISGGCEWF IRVWQIEDHL AVTLSVPNLE SLRYGWERRT KYSFIVLNQS 101: GRELERTFEV EGLFCTELLE WCHPKVMPTN KLQEVCLENN KLIIEVQVKV LEVVHEGGVT TEKEMFNIEG FDVLYTQVSR VSWLFVEHPN IAVDVRIKNQ 201: LVRTAYINVL LGLIETLDRS PRSLSETDLR DAHIELSELT EAGFKVDWLK KKLEEVSLAR KNDISDGSQV EELEEHVKNL KLELDNEKIK SSTASERVLL 301: LEKEVLDLKI ELDRTRREAC NLFCPEVSNW CFSKTLPLSK LQEKGFLENN KLTIEVYIKV KSVSWIFVKH PDTAVHFLPK NKLVKKAHMN TLLCLIKTLR 401: KPPLSLSETE LSNAYSELTK LTEVGFKLDW LKSKLEKASL ERKKSVSDGS QISAYDSRIK QISKYFVCFL LPRRTTKTLK SKQMGTQFRK ALTLTVTNFS 501: QKSSPINSPP FPSGGCNWYI KFYPKGSADD NYLSLFLSPD DPKSLGLNWK RRANFYFVLL NQSGKELHRT PEIGDQWFCD DSLSWGFPQT LPRKKLLDKI 601: FLDNDRFNIE IYIKVIEVVE GYHMFPASFT NKLLRSSLEY PDKSEKETVD INGFKVLSSQ VTSVKRIFEE HPDIAEDFRS KNQVVKTEYM SVLLRVIETM 701: AKPPQSISET ELSNVHSELT ELTEVGFKLE WLKAKLEEVC VAFKKANADG CRIQQLEEHV KNLEQTVSDL KVEMDKEKAK STAKVLSLED TLSDLKTELG 801: KEKAKNATAT DKFLLLKDTY SDLKVELEKE KAKSTSAAAK VLSLKEALSD LKVELDDQKI VNSATTANVL SWEDDDDLFS HTNCLGIQQK TNAYKRIN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)