AT2G42460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.670 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1); Has 882 Blast hits to 581 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 47; Plants - 810; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17676399..17679247 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50290.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 442 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMEIDLQKTF TWKIENFSGR KFPITSTVFS SGGCECYVLI RPKGDGFEDY LSLYLCVGNP KSLQPGWKRR ASLHFIVLNQ SGKEVHRTSE RYGLFGPEIP 101: GWGFRTALPL TKLQDRELLE NNTLFIEVYI KVTEVVHEGD ETRKDMLDFK GFNVLSSQIA SVSPIFAKYP KFADDIKPTS KAVKTVYLKI LLGLIKTVNK 201: PPEIFSETEL IKAYSSLIDL MEVGFRVKWL KSKLDEISLA RKKKVDADAA RVQELEGKVK NQVELDKEKT KSHVEPKMLS FKDYASPLQE EGFLENNKLI 301: IRVEVKVAEE GYLTGKEMFE IKGFEVPSSQ VISVSQLFMK HPDIATGFKL NGKGLKTAYM SLLLSLIETL RRPPLSFSDI ELSKANSTLR ELTEAGFKLD 401: WLKKKLEEVS LKRKNAVDDG SRVKQVEERI KILKVDIVGT QR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)